PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G033300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 187aa    MW: 19832.2 Da    PI: 8.3752
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G033300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000336082123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ Cg+ F++   L  H  +H
  Sevir.9G033300.1.p 60 FVCKTCGRAFTSFQALGGHRTSH 82
                        89**********99998888777 PP
2zf-C2H212.30.0005121143123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F     L  H+r+H
  Sevir.9G033300.1.p 121 HECHICGLGFEMGQALGGHMRRH 143
                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.2E-45583IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.87E-65686No hitNo description
PROSITE profilePS5015710.8036087IPR007087Zinc finger, C2H2
PfamPF139127.9E-106084IPR007087Zinc finger, C2H2
SMARTSM003550.216082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SuperFamilySSF576672.09E-5119146No hitNo description
PfamPF139121.8E-10121146IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619121148IPR007087Zinc finger, C2H2
SMARTSM003550.49121143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKHPRDQQEE VSLALSLSTT DSSTTTSDSA TAGSPASAAA SNKRARRRGP VVATSGEGEF  60
VCKTCGRAFT SFQALGGHRT SHLRGRHGLE LGVGAKALKQ HKAADAAGKG AGDKQEQRPQ  120
HECHICGLGF EMGQALGGHM RRHREEMGAA EAADAWVWRS VERLPEELEL RRAAAAEPPV  180
LLELFA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G033300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9574025e-62EU957402.1 Zea mays clone 1590997 ZFP16-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981259.11e-132zinc finger protein ZAT12
TrEMBLK4AFL51e-131K4AFL5_SETIT; Uncharacterized protein
STRINGSi037672m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-18C2H2 family protein