PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G033500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 153aa    MW: 15672.7 Da    PI: 7.5118
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G033500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0014365123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C+++F++   L  H  +H
  Sevir.9G033500.1.p 43 FECKTCSRRFPSFQALGGHRASH 65
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-741107No hitNo description
PfamPF139124.4E-134267IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1184370IPR007087Zinc finger, C2H2
SMARTSM003550.274365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139121.1E-884109IPR007087Zinc finger, C2H2
PROSITE profilePS501578.51785112IPR007087Zinc finger, C2H2
SMARTSM003557.885107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MERLTFGQEE PAELGIISVA EGVMLLLARG GGGGEPPASP RVFECKTCSR RFPSFQALGG  60
HRASHKRPRA GDASPAAPAA KARAHGCAVC GVEFALGQAL GGHMRRHRAV AEEEERESAA  120
AAASRGLAEE AEPKPDGAAR GLLGLDLNIA PS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G033500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678883.11e-101zinc finger protein ZAT12-like
TrEMBLA0A368SCX01e-100A0A368SCX0_SETIT; Uncharacterized protein
STRINGPavir.Ia00294.1.p3e-65(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-20C2H2 family protein