PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G040600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 272aa    MW: 28083.6 Da    PI: 6.3742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G040600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-1275123354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r+h e+E+rRR+ri+s +++Lr++l  +   p+   +Ka+ L kAve +++L
  Sevir.9G040600.1.p  75 RNHREAEKRRRERIKSHLDRLRSVLSCD---PKAQIDKASLLAKAVERVRDL 123
                         78*************************9...9***************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.19572123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1275130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-975123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1176127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-978129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MFPAAEVSAL AGAAGRQGEG GVVPMAMLPP FFMDSIWPAA AGGAGATGAT DSEEDEAAAA  60
AAAAAAHDRA LAASRNHREA EKRRRERIKS HLDRLRSVLS CDPKAQIDKA SLLAKAVERV  120
RDLKQRVAGV GEAAPAHLFP TEHDEIVVLA SGGAVFEASV CCDDRSDLLP ELIETLRALR  180
LRTLRAEMAT LGGRVRNVLV LARDVDGSGV TGDDDGYGGR TDSAGSVEGN AGGGGDFLKE  240
ALRALVERPG AGGGDRPKRR RVSGTNMQAA A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257261KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G040600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279660.0KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981312.11e-146transcription factor bHLH106-like
TrEMBLA0A368SD611e-145A0A368SD61_SETIT; Uncharacterized protein
STRINGPavir.J02699.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-24bHLH family protein