PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G042300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 262aa    MW: 27459 Da    PI: 6.7999
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G042300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_176.43.8e-24153215163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv  L+a N aL++el++lkk ++ +k+e+
  Sevir.9G042300.1.p 153 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGALRSELDQLKKACEDMKAEN 215
                         89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.8E-17150213No hitNo description
SMARTSM003382.1E-21153217IPR004827Basic-leucine zipper domain
PfamPF001706.1E-22153215IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.76155218IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-11156212No hitNo description
CDDcd147024.31E-20158208No hitNo description
PROSITE patternPS000360160175IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVSSASTSSG DERPSGAPGD PSAGAGTTAP LQGHAEWAAS MQAYYAAGGQ PYAWHAAQQH  60
MMAAAAAAAA GAAPPYGAPV PFPVSFHPAY YAHAAMATGV PYTAGEPVAA AEGKNKRKSS  120
GAPSVGSASG SSDAGREESS DKRDASADLK QDERELKRER RKQSNRESAR RSRLRKQQEC  180
EELAQKVTDL TAINGALRSE LDQLKKACED MKAENSQLMG EMEQSEAPSV VTTLSIQIDT  240
SKAHHGNNDL HHNKNNNDNK G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169175RRSRLRK
2169176RRSRLRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G042300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679229.14e-64DNA-binding protein EMBP-1 isoform X1
TrEMBLA0A1D6L8V25e-88A0A1D6L8V2_MAIZE; G-box-binding factor 1
STRINGSi039367m4e-68(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.14e-23G-box binding factor 3