PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G055100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 417aa MW: 42892.5 Da PI: 4.7408

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G055100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.9	2.3e-13	225	276	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + +rrkq+NRe+ArrsR RK a + eLe v++L eN++L +l +++ Sevir.9G055100.1.p 225 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQKF 276 679**************************************98887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-15	221	285	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.254	223	278	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.8E-10	224	277	No hit	No description
Pfam	PF00170	4.1E-10	225	274	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.81E-9	225	274	No hit	No description
Pfam	PF12498	4.4E-49	292	409	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MERVFSVEEI PNPYWAPTQP QAAAAGAVAA PGGGGGGGGG GGAGGAGDEV GAMNRCSSEW 60 YFQKFLEEAV LDSPGPVPGV GRGGGGVGVE AAESKPLGVG AASNAVVDPV EYNAMLKQKL 120 EKDLAAVAMW RASGATPPER PAAGSSLPNV DVSHAGPVNP IGGNVIPVQN KLAGAPGGPS 180 GPQVVQNADM LVKQATSSSS REQSDDDDME GEAETTGNAN PVQQRLQRRK QSNRESARRS 240 RSRKAAHLNE LEAQVAQLRV ENSSLLRRLA DVNQKFNEAA VDNRVLKADV ETLRAKVKMA 300 EDSVKRVTGM NALFPPVSDM SSLSMPFNGS PSDSTSDAAV PVQDDPSSYF ASPSEMGGNG 360 GYMPEIASSA QEDDDLVNAA LAAGKMGRTA SLQRVESLEH LQKRMCGGPA SSGSTS*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MERVFSVEEI PNPYWAPTQP QAAAAGAVAA PGGGGGGGGG GGAGGAGDEV GAMNRCSSEW  60
YFQKFLEEAV LDSPGPVPGV GRGGGGVGVE AAESKPLGVG AASNAVVDPV EYNAMLKQKL  120
EKDLAAVAMW RASGATPPER PAAGSSLPNV DVSHAGPVNP IGGNVIPVQN KLAGAPGGPS  180
GPQVVQNADM LVKQATSSSS REQSDDDDME GEAETTGNAN PVQQRLQRRK QSNRESARRS  240
RSRKAAHLNE LEAQVAQLRV ENSSLLRRLA DVNQKFNEAA VDNRVLKADV ETLRAKVKMA  300
EDSVKRVTGM NALFPPVSDM SSLSMPFNGS PSDSTSDAAV PVQDDPSSYF ASPSEMGGNG  360
GYMPEIASSA QEDDDLVNAA LAAGKMGRTA SLQRVESLEH LQKRMCGGPA SSGSTS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G055100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981429.1	0.0	bZIP transcription factor RISBZ2 isoform X1
Refseq	XP_022679227.1	0.0	bZIP transcription factor RISBZ2 isoform X2
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A368SDG2	0.0	A0A368SDG2_SETIT; Uncharacterized protein
STRING	Si035062m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	9e-47	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G055100.1.p

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]