PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G055100.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 325aa MW: 34101.2 Da PI: 5.2216

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G055100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.5	1.5e-13	133	184	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + +rrkq+NRe+ArrsR RK a + eLe v++L eN++L +l +++ Sevir.9G055100.2.p 133 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQKF 184 679**************************************98887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-15	129	193	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.254	131	186	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.1E-10	132	185	No hit	No description
SuperFamily	SSF57959	1.31E-9	133	182	No hit	No description
Pfam	PF00170	2.6E-10	133	182	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	2.6E-49	200	317	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MGVKCDYAVV LRFIGGCALV EYVSSISLIC LLYVLVVSLA SGATPPERPA AGSSLPNVDV 60 SHAGPVNPIG GNVIPVQNKL AGAPGGPSGP QVVQNADMLV KQATSSSSRE QSDDDDMEGE 120 AETTGNANPV QQRLQRRKQS NRESARRSRS RKAAHLNELE AQVAQLRVEN SSLLRRLADV 180 NQKFNEAAVD NRVLKADVET LRAKVKMAED SVKRVTGMNA LFPPVSDMSS LSMPFNGSPS 240 DSTSDAAVPV QDDPSSYFAS PSEMGGNGGY MPEIASSAQE DDDLVNAALA AGKMGRTASL 300 QRVESLEHLQ KRMCGGPASS GSTS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G055100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679228.1	0.0	bZIP transcription factor RISBZ2 isoform X3
Swissprot	Q7X9A8	1e-147	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	A0A368SF74	0.0	A0A368SF74_SETIT; Uncharacterized protein
STRING	Si035062m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	1e-39	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G055100.2.p

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]