PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G055100.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 228aa    MW: 24437 Da    PI: 5.1713
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G055100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.28.3e-143687556
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
                        + +rrkq+NRe+ArrsR RK a + eLe  v++L  eN++L  +l   +++ 
  Sevir.9G055100.3.p 36 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQKF 87
                        679**************************************98888777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-153296IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.2543489IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.5E-103588No hitNo description
PfamPF001701.4E-103686IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-103685No hitNo description
PfamPF124981.1E-49103220IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MLVKQATSSS SREQSDDDDM EGEAETTGNA NPVQQRLQRR KQSNRESARR SRSRKAAHLN  60
ELEAQVAQLR VENSSLLRRL ADVNQKFNEA AVDNRVLKAD VETLRAKVKM AEDSVKRVTG  120
MNALFPPVSD MSSLSMPFNG SPSDSTSDAA VPVQDDPSSY FASPSEMGGN GGYMPEIASS  180
AQEDDDLVNA ALAAGKMGRT ASLQRVESLE HLQKRMCGGP ASSGSTS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G055100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0880640.0BT088064.1 Zea mays full-length cDNA clone ZM_BFb0384A17 mRNA, complete cds.
GenBankMZEOHP10.0L00623.1 Zea mays opaque2 heterodimerizing protein 1 (OHP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981429.11e-161bZIP transcription factor RISBZ2 isoform X1
RefseqXP_022679227.11e-161bZIP transcription factor RISBZ2 isoform X2
RefseqXP_022679228.11e-162bZIP transcription factor RISBZ2 isoform X3
SwissprotQ7X9A81e-128RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLA0A368SDG21e-160A0A368SDG2_SETIT; Uncharacterized protein
TrEMBLA0A368SF741e-161A0A368SF74_SETIT; Uncharacterized protein
STRINGSi035062m1e-158(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.14e-41bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]