PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G061000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 184aa    MW: 19793.5 Da    PI: 7.7134
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G061000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.57.9e-37141141101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk lrrkCa+dC+lapyfpa++p+++a+v+++FGasn+ +++++lp +er +a+++++ eA++r++dPvyG++g++ +lq +++ ++
  Sevir.9G061000.1.p  14 RCAACKNLRRKCAQDCILAPYFPASDPQRYACVQRVFGASNIARMVQSLPVHERGKAADTMAAEARWRVQDPVYGCAGIVGRLQGEIKAAQ 104
                         6****************************************************************************************** PP

              DUF260  92 aelallkeel 101
                          ela++++++
  Sevir.9G061000.1.p 105 CELARTRAQI 114
                         *****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.57513114IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-3614111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSKSTEAGRS GSRRCAACKN LRRKCAQDCI LAPYFPASDP QRYACVQRVF GASNIARMVQ  60
SLPVHERGKA ADTMAAEARW RVQDPVYGCA GIVGRLQGEI KAAQCELART RAQIAMHAAA  120
AARPQPVVDA RLSAPAQAAP PPQEQQQGDA LVMQLDPFQG LDALLIDDYR AVVDLVDDEM  180
NTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-311510912113LOB family transfactor Ramosa2.1
5ly0_B5e-311510912113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G061000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661257.12e-87LOB domain-containing protein 24
SwissprotP594678e-39LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594687e-39LBD24_ARATH; LOB domain-containing protein 24
TrEMBLK4AJQ72e-91K4AJQ7_SETIT; Uncharacterized protein
STRINGSi039129m4e-92(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-38LBD family protein