PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G068600.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 1183aa MW: 132898 Da PI: 5.9447

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G068600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.6	8e-08	128	187	1	48
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............t 48 +fY Y+++vGF+ r+ ++++s +ge ++++f C + ++++++k t Sevir.9G068600.2.p 128 EFYYGYGERVGFKARTGSNRRSGGDGEKIMQRFLCWRGNYANRRSKGketeevveaaaaT 187 6************************************99999888874444444444432 PP
2	FAR1	75.9	8.4e-24	436	520	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +YA GFsvrk k+ +n +++r +vCskeg+r+++ ++ +++++r+etrtgC+a++++k +++gk++vt+++++HnH+ Sevir.9G068600.2.p 436 EFYVNYAGAEGFSVRKGCLDKTAKNV-TKSRAYVCSKEGFRTKSISS--ESKKPRPETRTGCQAHMTIKITESGKYVVTEFVSDHNHD 520 6******************95555.99**********9988..99**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-5	128	186	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS51152	10.477	308	368	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF03101	3.4E-21	436	520	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.9E-23	622	713	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.99	889	936	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.4E-7	911	938	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	3.5E-5	912	933	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1183 aa Download sequence Send to blast
MVDRAAAPAE AASSDPPPEP GAPPRQAGTA HEKEDAPAAA AAAGPPPPPQ QAGDADEEDG 60 ASASPAGGPG ERCLAMMEVV AKDGAGVKWK VSRLVVEHNH ELQVAPGEVA ATVPALGMEF 120 DSVDAAKEFY YGYGERVGFK ARTGSNRRSG GDGEKIMQRF LCWRGNYANR RSKGKETEEV 180 VEAAAATAAE KRKREPYRTR SRNPAKKDAE IIEVSKGVGM GGAENGRGSR RGRSKKGMVE 240 QEESVAGLEV EKDVVEDASA PPPPDKEAEE GEGEDQEGVE EEVQVEVKRG RGRPRKAVAD 300 DNAEQARALR ELGVRASQYN NEERKKILTK YLSKRQSRPA SSRPTKIASR QALAERRKRG 360 DGGRFLSSEG QQPSGQPSER RSKRLEKQSL KMEEKAESKE DEIIEAEPDP EEEVVAGPGG 420 EPKIGMVFLD EDKAYEFYVN YAGAEGFSVR KGCLDKTAKN VTKSRAYVCS KEGFRTKSIS 480 SESKKPRPET RTGCQAHMTI KITESGKYVV TEFVSDHNHD REAPLVDIQI LKSQKLLAKV 540 QQPPDPPKVV LIPNEYKNYT RTKCIKDMQL GDAQAISEYL RRMKGENPSF FYAIQVDEDD 600 QFTNVFWADF KSIMDYNYFG DVVCIDTRYC TSDYGRPLLL FIGVNHHKQP IIFGTALIYD 660 DSVQSFRWLF ETFKSAMSGK QPKTVLTDQS TELSDAISSV WPGTTHRFSL LHLYLTASKV 720 LRDNFQASET FALDFSRWLY DYEEEDFISS WEILSEKYNL KDNEWLNKLY EDRERWGSPY 780 GRDTFCADIA ATLRSDNTDT ILKDLLKPEV DLQNFFNSYN KFLEEKRLAE QQADYLGAQM 840 TQRVAPLRLL WQAANSYTPT LFEMFRMEFE QISNCMVFSC GEIGPISEYQ VTAKDKPRGQ 900 FVRFDSTECV VVCSCKKFEF LGLPCCHVLK ILELRNIKEL PPHYILKRWR KDARSESPGE 960 SYGYATIEED PRFSLSRRYN TLYRTLYKIA EKSSESIEAY AFLENQYEQL VEQVESEVSN 1020 SEPRRVTAKK NKNVEPRRQQ QSPLDSNKKK KARQGLLEPE EIEIPLRAVP PTVSNDIPSH 1080 LRTPTNQFLA PSHIMQAPYV AQQFGLGSLQ GFPGMSAFGQ IQEPAPLHQH SHLQPPPFHN 1140 GPQIPQAPPP DIQSLQFLSS NPQLGHQTTD QGQYTIPVWD FL*

Sequence ? help Back to Top

Protein Sequence Length: 1183 aa Download sequence Send to blast

MVDRAAAPAE AASSDPPPEP GAPPRQAGTA HEKEDAPAAA AAAGPPPPPQ QAGDADEEDG  60
ASASPAGGPG ERCLAMMEVV AKDGAGVKWK VSRLVVEHNH ELQVAPGEVA ATVPALGMEF  120
DSVDAAKEFY YGYGERVGFK ARTGSNRRSG GDGEKIMQRF LCWRGNYANR RSKGKETEEV  180
VEAAAATAAE KRKREPYRTR SRNPAKKDAE IIEVSKGVGM GGAENGRGSR RGRSKKGMVE  240
QEESVAGLEV EKDVVEDASA PPPPDKEAEE GEGEDQEGVE EEVQVEVKRG RGRPRKAVAD  300
DNAEQARALR ELGVRASQYN NEERKKILTK YLSKRQSRPA SSRPTKIASR QALAERRKRG  360
DGGRFLSSEG QQPSGQPSER RSKRLEKQSL KMEEKAESKE DEIIEAEPDP EEEVVAGPGG  420
EPKIGMVFLD EDKAYEFYVN YAGAEGFSVR KGCLDKTAKN VTKSRAYVCS KEGFRTKSIS  480
SESKKPRPET RTGCQAHMTI KITESGKYVV TEFVSDHNHD REAPLVDIQI LKSQKLLAKV  540
QQPPDPPKVV LIPNEYKNYT RTKCIKDMQL GDAQAISEYL RRMKGENPSF FYAIQVDEDD  600
QFTNVFWADF KSIMDYNYFG DVVCIDTRYC TSDYGRPLLL FIGVNHHKQP IIFGTALIYD  660
DSVQSFRWLF ETFKSAMSGK QPKTVLTDQS TELSDAISSV WPGTTHRFSL LHLYLTASKV  720
LRDNFQASET FALDFSRWLY DYEEEDFISS WEILSEKYNL KDNEWLNKLY EDRERWGSPY  780
GRDTFCADIA ATLRSDNTDT ILKDLLKPEV DLQNFFNSYN KFLEEKRLAE QQADYLGAQM  840
TQRVAPLRLL WQAANSYTPT LFEMFRMEFE QISNCMVFSC GEIGPISEYQ VTAKDKPRGQ  900
FVRFDSTECV VVCSCKKFEF LGLPCCHVLK ILELRNIKEL PPHYILKRWR KDARSESPGE  960
SYGYATIEED PRFSLSRRYN TLYRTLYKIA EKSSESIEAY AFLENQYEQL VEQVESEVSN  1020
SEPRRVTAKK NKNVEPRRQQ QSPLDSNKKK KARQGLLEPE EIEIPLRAVP PTVSNDIPSH  1080
LRTPTNQFLA PSHIMQAPYV AQQFGLGSLQ GFPGMSAFGQ IQEPAPLHQH SHLQPPPFHN  1140
GPQIPQAPPP DIQSLQFLSS NPQLGHQTTD QGQYTIPVWD FL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	287	295	KRGRGRPRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G068600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981561.4	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3L6TUH1	0.0	A0A3L6TUH1_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRING	Sb01g006380.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-103	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sevir.9G068600.2.p