PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G073900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 203aa    MW: 22139.2 Da    PI: 11.3963
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G073900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.33e-1279130152
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                         e++++r+rrk++NR++ArrsR+RK++++eeL+  ++ L ae+++L  +l  l
  Sevir.9G073900.1.p  79 EERRRRQRRKESNRLSARRSRERKQQRLEELRGDAARLRAERQQLEARLRGL 130
                         6889******************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-975130No hitNo description
SMARTSM003388.7E-577153IPR004827Basic-leucine zipper domain
PfamPF001709.9E-879130IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.04781131IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.32E-783128No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
CDDcd147028.44E-1290131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MLSVQEALDL DFGAASSSCG SRDLLGMDII TCGFTPWGPD TCPSLDQVLA SSRTSPAAPV  60
RGREEEEEEA AAPGEEQEEE RRRRQRRKES NRLSARRSRE RKQQRLEELR GDAARLRAER  120
QQLEARLRGL SVRGAANARL RAEAAALARR LREARGRLLA LRRLAAAHAL PRAQPPMVPP  180
LVQQQAAGVA PPAPLGLASL MT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18088RRRRQRRKE
295102RRSRERKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G073900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986220.14e-85ocs element-binding factor 1-like
TrEMBLA0A368SE941e-132A0A368SE94_SETIT; Uncharacterized protein
STRINGSb01g006850.17e-54(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138452429