PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G083100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 255aa MW: 29186 Da PI: 10.7119

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G083100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.2	1.3e-13	118	180	29	91
FAR1 29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 + +fvC keg+r+++k++ + ++ +raetrt+C+ +++k+++ ++ +v +l+leHnH+l p Sevir.9G083100.1.p 118 FWLRFVCAKEGRRSQDKRD-HLTKCPRAETRTECQIYMNLKMDRkKEIQKVPELVLEHNHALHP 180 5679**********999.999***************9989999**********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-9	117	180	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSNLLTKAHL EKHRRGKKAR GRRKTARDRR KRAGGAEVTV ASPDGSFFES VVYCFDPVHH 60 SLFSWKKQPL KFHSKLLRWK KRLTQKRPTK HTMIQIQLLG LLPQVGMEFS TSDEAWAFWL 120 RFVCAKEGRR SQDKRDHLTK CPRAETRTEC QIYMNLKMDR KKEIQKVPEL VLEHNHALHP 180 PETLHLMVSQ RLHLILMEQR RLLFLLRWCG HLGVAGYLPR GGAALGVAVA GILDGGGGSS 240 EPYHFVIVDD DGNE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G083100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022678701.1	0.0	uncharacterized protein LOC101769320 isoform X1
TrEMBL	A0A368SEK3	1e-115	A0A368SEK3_SETIT; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-09	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sevir.9G083100.1.p