PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G105600.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRF

Protein Properties

Length: 508aa MW: 54530.1 Da PI: 8.0338

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G105600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.1	7.6e-24	129	172	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Sevir.9G105600.2.p 129 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 172 69***************************************986 PP
2	QLQ	59.7	8.2e-21	61	97	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan P+P+ Ll++i++ Sevir.9G105600.2.p 61 GPFTPSQWIELEHQALIYKYLAANIPIPHSLLVPIRR 97 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.3E-12	61	97	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-14	62	96	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.009	62	97	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	128	172	IPR014977	WRC domain
Pfam	PF08879	4.1E-20	130	171	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MHARKSQGKQ WSTVIQAYCR DPTVILGGFL WTSPMNLCCL SGLSSVSLSS SMQGAMARVR 60 GPFTPSQWIE LEHQALIYKY LAANIPIPHS LLVPIRRSLA SSPYPPSYFG TSTLGWGSFQ 120 LGYSGNADLE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN RGRHRSRKHV EGQPGHAAKA 180 MSAAVAAAAA TQPAALAASG AGATAAGLTV SQHQQPVKSY AAGATDPCSL QYNRELVNKQ 240 NESDNMQDSD NLSMLTSMST RNPGSLFPFS KQNNPFEVTS SRPEFGLVSS DSLMSSPHSS 300 LENVNLLSSQ SLNENQSSAS LQHFVDWPRT PAQGGLSWPD AEDMQAQRSQ LSVSAPMASS 360 ELSSASTSPI HEKLMLSPLK LSREYSPIGL SIAASRDEVS QLEANWATMF RDSSMGGPLG 420 EVLTKNGNAE AKNCLSAPLN LLTDFWDSSP GMESSPVGVL QKTTFGSVSS STGSSPRMEN 480 HGAYDGISNL RDDLGSIVVS HPNIRLL*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MHARKSQGKQ WSTVIQAYCR DPTVILGGFL WTSPMNLCCL SGLSSVSLSS SMQGAMARVR  60
GPFTPSQWIE LEHQALIYKY LAANIPIPHS LLVPIRRSLA SSPYPPSYFG TSTLGWGSFQ  120
LGYSGNADLE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN RGRHRSRKHV EGQPGHAAKA  180
MSAAVAAAAA TQPAALAASG AGATAAGLTV SQHQQPVKSY AAGATDPCSL QYNRELVNKQ  240
NESDNMQDSD NLSMLTSMST RNPGSLFPFS KQNNPFEVTS SRPEFGLVSS DSLMSSPHSS  300
LENVNLLSSQ SLNENQSSAS LQHFVDWPRT PAQGGLSWPD AEDMQAQRSQ LSVSAPMASS  360
ELSSASTSPI HEKLMLSPLK LSREYSPIGL SIAASRDEVS QLEANWATMF RDSSMGGPLG  420
EVLTKNGNAE AKNCLSAPLN LLTDFWDSSP GMESSPVGVL QKTTFGSVSS STGSSPRMEN  480
HGAYDGISNL RDDLGSIVVS HPNIRLL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G105600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969909	0.0	EU969909.1 Zea mays clone 337118 growth-regulating factor 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981896.1	0.0	growth-regulating factor 6
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	K4A7G6	0.0	K4A7G6_SETIT; Uncharacterized protein
STRING	Si034822m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	8e-50	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Sevir.9G105600.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]