PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G114000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 234aa    MW: 26662.3 Da    PI: 5.7363
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G114000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.54.4e-181821090
                FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                        +GF+vr++ s  s ++g++++ +f+C+keg +  e+++ ++k++r+ra t+ gCka++++ k++++kw+v+kl l H+Hela
  Sevir.9G114000.2.p  1 MGFEVRIRLSCCSPKDGTFVMWRFNCTKEGADPCEENNnENKRKRNRAATKEGCKASFEIVKREQDKWVVSKLFLAHTHELA 82
                        7******************************9988877467778899*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-16182IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGFEVRIRLS CCSPKDGTFV MWRFNCTKEG ADPCEENNNE NKRKRNRAAT KEGCKASFEI  60
VKREQDKWVV SKLFLAHTHE LAAVQDEVHY IQSNSEVVVL AKTSVLQGNW IAPTMNPQLG  120
ELGRNFEELS PNNQEMIEPC RCDFGLDDTQ KLLGYFKRLN TENPTFSYAF QVDKNDCLTH  180
AFWADAKVRT SYCYFGDGVR LETSFVENDN FLPLVLLTGT LPAKCSIWLC ITY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G114000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650502.11e-112PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015691162.11e-112PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A368SFQ91e-158A0A368SFQ9_SETIT; Uncharacterized protein
STRINGOB03G39100.11e-111(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.14e-24FAR1 family protein