PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G132800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 1283aa    MW: 138150 Da    PI: 3.8539
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G132800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.75.9e-1110581080527
                          --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                          +Crf++ +G C+yG++C+F+H++
  Sevir.9G132800.2.p 1058 NCRFYMLNGSCSYGSSCHFNHPQ 1080
                          7********************97 PP
2zf-CCCH29.71.1e-0911161139427
                          ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                          + C +++r+GtC+yG +C+F+H++
  Sevir.9G132800.2.p 1116 RKCTYYMRNGTCRYGKKCCFNHPE 1139
                          67********************96 PP
3zf-CCCH18.34.2e-0612501275126
                          --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                          +++++C+++++ G+Ck+  +C F+H+
  Sevir.9G132800.2.p 1250 PGEPECSHYMKHGYCKFQKSCIFHHP 1275
                          5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.2E-510531080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.95710531081IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-510571080IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-810581080IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-510591079IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.72311121140IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-511121139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-611151140IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-711161139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-511181139IPR000571Zinc finger, CCCH-type
SMARTSM003560.02312491276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13112491277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-512521278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1283 aa     Download sequence    Send to blast
MAGVEDEDEY KDALGAADPP PSSPSPTSKP KPAAAAGGGG GGLGRRLFAS IPLPASLSAA  60
IGRFSSPKPP APNVGLGLLL HAGPATPADG SGTPASDAAS AISSPHLPPL VSLQPQHGED  120
RVAGLGAGMG EEDLGLVPAE EQVWPTAEDR EKEGLAVDEC SANRNDFSLL GQEEGEQCQG  180
DELGAAVDGC MVQDQEEVVE QEGATEDCAA VVEDQSNNAA VEQCAGDETR AVKDDNAVEV  240
NEKVTEQEGA VSILDAAEDG VAVGSQEEEE DVVVAEQGED VISVQDQLEV VELCTGDQLR  300
TTTEDNAGRD QDLVKQEEAT EYYTTLEAVE QCTNDGSKEV KDGNIVEEEE RAVELEGAPG  360
LLDAAKDGTP VELQEEDVVV AEQEEDEDVI SVQDQHKVVD QCSGDQLITA TDDNAAQDQD  420
VMKHEGATEY YIAVEAVEQC TNDGSRAVKD GNVVEEKDKV AEQVVAVGIL YAAKDCATGE  480
SQEEGDVVVA EQSEDSISVQ DQHKVVELFT GNQLKASADD NAAQDQEVLE QEGATEYYTT  540
LEAIEECTND ESRVAKDGNV VEEKERPVKQ EGAVGVLNAA KDGFIVELQE EDVMVAEQCE  600
GDIFVRNQDK VVELCTSGQI KTTVVDNAAE GQEVVEEECA IVDRDAATDD IAVEDQEKEV  660
KQSAGDESRA TKDGNAVEVN EKMVDQEDVI DKHGVIKDGN GVVLLEENIV VVVEQGGDAI  720
SLPDVSNVEQ YTIDQLRATT DDNAAENQEI GEQGAVVEGV VTTDGIDIED QEKEVEHSSG  780
DELTSTKNEN GVEDNEKVDQ EDIIDKQGVI KDGSGVDSQE EDVVVTEQGG DGISVRDVGN  840
VVKQYTSDQR TTMEDNVVEC QEVVEKEGAV FERGATAGGT TVEDQDKEVE QSAGDESRAT  900
NDENGVEDAT SKQGAAKDGS GVESQEDEDV VPAEQGGVDI SVRDEGNVME QCTSDQQRTT  960
TDDNAAEDQE VVEQEGVVSI LGAAKVDIAV ESLQEEDIVV ADQVEDGVSV QDQDKVVEQC  1020
TSDQLRTRTY GYAEEDQEAR RENIGFSAGY PQRPGKLNCR FYMLNGSCSY GSSCHFNHPQ  1080
LKAKLEVSNF PSEQRNREVE FLELNRVGLP IREGARKCTY YMRNGTCRYG KKCCFNHPEQ  1140
VLDAQLHMPT GWDDTNLQSS PHSKKSTEHA TINDISSGLE ILPPNGSEIL PPNILRMLLP  1200
PQNVPPCTEE KEMKVKKEAI DDGTDNEHDF DTKSENVLQQ QEKTIYPQRP GEPECSHYMK  1260
HGYCKFQKSC IFHHPTDHLS NK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G132800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982130.30.0uncharacterized protein LOC101775251
TrEMBLA0A368SGC10.0A0A368SGC1_SETIT; Uncharacterized protein
STRINGPavir.Ia00947.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.15e-32C3H family protein