PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G151200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family G2-like
Protein Properties Length: 154aa    MW: 16767.4 Da    PI: 8.8838
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G151200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like604.8e-1968122455
             G2-like   4 lrWtpeLHerFveaveqLGGsekAtP...ktilelmkvkgLtlehvkSHLQkYRl 55 
                         lrW+ +LH  Fv+av+  GG+++A     k+ +e+m+v gLt++++kSHLQ+YR 
  Sevir.9G151200.1.p  68 LRWSDDLHMIFVKAVAYQGGPHEAKStalKETMEAMGVVGLTIQNIKSHLQRYRE 122
                         89*******************998542348889999******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-964124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-1866123IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-1368123IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MSSLSQQSAS VSSPIFRLGI FQCPSGPQPT LKRIMSKNKP TQKNDVSDMS SMLASHIICA  60
MLPARSFLRW SDDLHMIFVK AVAYQGGPHE AKSTALKETM EAMGVVGLTI QNIKSHLQRY  120
REKCELSAEA PVDEVPGTTS LSKAALNQNE FLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G151200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797593.12e-63myb family transcription factor PHL12-like
RefseqXP_025797594.12e-63myb family transcription factor PHL12-like
TrEMBLA0A368SGY51e-110A0A368SGY5_SETIT; Uncharacterized protein
STRINGSb01g013080.11e-47(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154991216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.24e-12G2-like family protein