PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G153200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

YABBY

Protein Properties

Length: 195aa MW: 21752.9 Da PI: 9.0374

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G153200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	234.9	1.8e-72	5	168	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlks.nvekees 91 +++ + e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ q l++++h + ++e+lkv++ ++++ n+ ++ Sevir.9G153200.1.p 5 QIVPALEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLPVQNH-----SQLVQENLKVHNFSFSTeNYCEYAP 90 567788****************************************************9.....5568899999998886515666666 PP YABBY 92 astsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s++ ++ ++ s++ d++ ++ +v PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl Sevir.9G153200.1.p 91 SSSKYRMPTMfSTKGDQD--HMLHVRAAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 168 677777766644444433..44567889************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.6E-70	11	168	IPR006780	YABBY protein
SuperFamily	SSF47095	4.84E-7	115	162	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.3E-4	117	162	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MSAPQIVPAL EHVCYVHCNF CNTILAVSVP SNSMLNIVTV RCGHCTSLLS VNLRGLIQSL 60 PVQNHSQLVQ ENLKVHNFSF STENYCEYAP SSSKYRMPTM FSTKGDQDHM LHVRAAPEKR 120 QRVPSAYNRF IKEEIRRIKA SNPAISHREA FSTAAKNWAH FPNIHFGLGP LESSKKLDEA 180 IGAAGHPHKV QDLY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G153200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982272.1	1e-138	protein YABBY 2
Swissprot	Q10FZ7	1e-101	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A368SGU3	1e-139	A0A368SGU3_SETIT; Uncharacterized protein
STRING	Pavir.Ia01130.1.p	1e-121	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	5e-58	YABBY family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G153200.1.p