PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G153200.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

YABBY

Protein Properties

Length: 194aa MW: 21681.8 Da PI: 9.0374

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G153200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	235.8	9.6e-73	5	167	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlks.nvekees 91 +++ + e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ q l++++h + ++e+lkv++ ++++ n+ ++ Sevir.9G153200.2.p 5 QIVPALEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLPVQNH-----SQLVQENLKVHNFSFSTeNYCEYAP 90 567788****************************************************9.....5568899999998886515666777 PP YABBY 92 astsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s++ ++ ++ ++ +++++ + +r PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl Sevir.9G153200.2.p 91 SSSKYRMPTMfsTKGDQDHMLH----VRAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 167 7777777666533444455554....89*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.1E-71	11	167	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-7	111	161	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.2E-4	113	161	IPR009071	High mobility group box domain
CDD	cd00084	4.60E-4	121	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSAPQIVPAL EHVCYVHCNF CNTILAVSVP SNSMLNIVTV RCGHCTSLLS VNLRGLIQSL 60 PVQNHSQLVQ ENLKVHNFSF STENYCEYAP SSSKYRMPTM FSTKGDQDHM LHVRAPEKRQ 120 RVPSAYNRFI KEEIRRIKAS NPAISHREAF STAAKNWAHF PNIHFGLGPL ESSKKLDEAI 180 GAAGHPHKVQ DLY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G153200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982272.1	1e-140	protein YABBY 2
Swissprot	Q10FZ7	1e-103	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A368SGU3	1e-137	A0A368SGU3_SETIT; Uncharacterized protein
STRING	Pavir.Ia01130.1.p	1e-123	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-59	YABBY family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G153200.2.p