PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G154600.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 262aa    MW: 28087.4 Da    PI: 10.0861
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G154600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.56.7e-3180136158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rkpylheSRh hA+rR+RgsgGrF
  Sevir.9G154600.3.p  80 DAPIYVNPKQYEGILRRRRARAKAERENRL-AKGRKPYLHESRHLHAMRRARGSGGRF 136
                         68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.2E-3478139IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.96579139IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.9E-2882136IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-2282104IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-22113136IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLPGNSESDG KGEKVPEHST TVSLQSPFPE YNGRFEIGLG QSMAPSNYSS ADQCYGMLTT  60
YGMRSMSSGR LLLPLNAPAD APIYVNPKQY EGILRRRRAR AKAERENRLA KGRKPYLHES  120
RHLHAMRRAR GSGGRFLNTK KEGAANANGS GRTAAAAPPA RFATSPSFEP PRAPPGLGNV  180
SNQRCHSRSS VSSLSGSEVS SIYDHHEDHA SHHRQYGGGM VRAPPFFTPL PAIMDGDHGG  240
AAAIPSFKWA ASDGCCELLK A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A9e-1880138261HAPB protein
4g92_A9e-1880138261HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G154600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982309.10.0nuclear transcription factor Y subunit A-10
RefseqXP_004982310.10.0nuclear transcription factor Y subunit A-10
RefseqXP_004982311.10.0nuclear transcription factor Y subunit A-10
TrEMBLK4AC580.0K4AC58_SETIT; Uncharacterized protein
STRINGSi036465m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-19nuclear factor Y, subunit A10