PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G164000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 374aa    MW: 41879.9 Da    PI: 6.8586
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G164000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.3e-19401201499
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           +++p +fa++++g    s  ++l+++sg++W++ +  ++  ++++l++GWk+Fv+a+ + egD ++Fk++g s+f   v vf++
  Sevir.9G164000.2.p  40 ETMSIPARFANNFNGH--ISEVVSLKSPSGKTWSIGV-GNNDTDEVFLQSGWKDFVSAHSIAEGDYLLFKYSGVSSF--DVLVFDS 120
                         569*******888666..6779***************.5666666***************************99999..8888876 PP
2B3421.7e-13265364199
                         EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                  B3   1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                         f++v+ ps+v ++  g ++++ +fa+++ g  ++  +++l+  +   +W  +++ ++ s++ + ++GW +Fv +ngL + D+++F+l++  
  Sevir.9G164000.2.p 265 FVQVMHPSHVRAQkpGVVSISSEFASKYLGAGRG--DIILRRvSIKGKWHARFTCNRFSRG-LTGRGWCGFVGDNGLLDHDVCLFELMKGq 352
                         778888999988877999**********444233..78888856669******88888877.6789********************99766 PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                         ++ +++v+v+rk
  Sevir.9G164000.2.p 353 RRPTMTVHVLRK 364
                         999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2324123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2326126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.07227121IPR003340B3 DNA binding domain
CDDcd100172.59E-1928119No hitNo description
SMARTSM010191.8E-1230121IPR003340B3 DNA binding domain
PfamPF023622.8E-1640119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-17258363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-17259363IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-10263363No hitNo description
PfamPF023627.7E-11265364IPR003340B3 DNA binding domain
SMARTSM010190.0026265365IPR003340B3 DNA binding domain
PROSITE profilePS508639.065267365IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MQNLDKNCRV CMEWQEHCYW SHMADDQKHF FKPMVGGFAE TMSIPARFAN NFNGHISEVV  60
SLKSPSGKTW SIGVGNNDTD EVFLQSGWKD FVSAHSIAEG DYLLFKYSGV SSFDVLVFDS  120
SGCEKTSPHF AKNHGYERIE GSAGVEGARR GSHKFKGGKD CTPQLLPSDE DEDGDDDSDL  180
ELAVQKNTSK SISKSCKRKL YRDIEQVHSQ VKSDEDDLEL DHEGDAPTGY YFCKNGPVSD  240
YHLTEEDREE ISSIRIPAQS TNPVFVQVMH PSHVRAQKPG VVSISSEFAS KYLGAGRGDI  300
ILRRVSIKGK WHARFTCNRF SRGLTGRGWC GFVGDNGLLD HDVCLFELMK GQRRPTMTVH  360
VLRKVRGHFV LLR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G164000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982409.20.0B3 domain-containing protein Os03g0622200
SwissprotQ10GM31e-134Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A368SJ490.0A0A368SJ49_SETIT; Uncharacterized protein
STRINGSi040023m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-21B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]