PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G164800.10.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Protein Properties

Length: 332aa MW: 37402.7 Da PI: 8.382

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G164800.10.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.4	2e-11	173	239	17	84
E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 ++k++a h +++s +tl++ +++++W +k+ r+ s++ +l + W eFv++n+++egD++++ Sevir.9G164800.10.p 173 GISKEYAFPHF--PHKSANVTLQTpSKSNKWHLKFYKRNASRKNMLMGQWLEFVRDNHVQEGDICLLFP 239 57777776664..457789***4555***77999999********************9764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.88E-6	2	53	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	4.6E-6	2	54	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE pattern	PS01359	0	5	50	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:2.40.330.10	6.5E-18	148	256	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-18	149	256	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0015	156	256	IPR003340	B3 DNA binding domain
CDD	cd10017	4.66E-18	156	254	No hit	No description
PROSITE profile	PS50863	11.589	157	256	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-9	172	251	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDTVCEVCGN IGYKHLLVCC RDCKCSAVHL YCLDKVIFDA SLAEWWCDEC LQRRGEVPCS 60 RSLERVSSQR SPNHDHFGST VQQQVTKRVK SAKNAGPRRK SKAEDIPSAK YSLDSDDLQA 120 SSKAHYVLSY RSYLSEAQKQ RVMAFIKEIQ PKITVFVAVM LKRNVQPPGP FLGISKEYAF 180 PHFPHKSANV TLQTPSKSNK WHLKFYKRNA SRKNMLMGQW LEFVRDNHVQ EGDICLLFPT 240 AGGRRYTFTV YLFCASATHS IGRAGFQMVC PCPGRSSTKM ASEVHIMEES TNDEHISLET 300 DMREISDDSL EGEDSGGLSQ PPYIVPCRNS I*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G164800.10.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797620.1	0.0	B3 domain-containing protein Os03g0619800-like isoform X3
TrEMBL	A0A2T7C3P8	0.0	A0A2T7C3P8_9POAL; Uncharacterized protein
TrEMBL	A0A2T7C3Q9	0.0	A0A2T7C3Q9_9POAL; Uncharacterized protein
STRING	Pavir.Ia01277.1.p	1e-173	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Sevir.9G164800.10.p