PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G164800.12.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 259aa    MW: 29276 Da    PI: 9.9402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G164800.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.2e-151892523699
                          EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                   B3  36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                           +  +  g++W  ++ + +++++ +l +GW +F+++ngL++gD+++F+l+++ ++ +++v+++++
  Sevir.9G164800.12.p 189 AVALQCMGKTWITQMVIHNGRRW-FLNGGWVRFARDNGLRVGDICLFELKKNkRKLTMKVHIISR 252
                          44455589*******77777666.6999**********************9999999***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.17E-6253IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.0E-6254IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS013590550IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.101.2E-21148252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-19149251IPR015300DNA-binding pseudobarrel domain
CDDcd100174.74E-17156251No hitNo description
SMARTSM010197.3E-9156253IPR003340B3 DNA binding domain
PROSITE profilePS5086311.914157253IPR003340B3 DNA binding domain
PfamPF023623.9E-13177252IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDTVCEVCGN IGYKHLLVCC RDCKCSAVHL YCLDKVIFDA SLAEWWCDEC LQRRGEVPCS  60
RSLERVSSQR SPNHDHFGST VQQQVTKRVK SAKNAGPRRK SKAEDIPSAK YSLDSDDLQA  120
SSKAHYVLSY RSYLSEAQKQ RVMAFIKEIQ PKITVFVAVM LKRNVQPPGP FLELGVRYAA  180
AHLPASGQAV ALQCMGKTWI TQMVIHNGRR WFLNGGWVRF ARDNGLRVGD ICLFELKKNK  240
RKLTMKVHII SREQSSLK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235242LKKNKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G164800.12.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685567.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLA0A2T7C3P81e-109A0A2T7C3P8_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3Q41e-110A0A2T7C3Q4_9POAL; Uncharacterized protein
STRINGPavir.Ia01277.1.p2e-88(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-07B3 family protein