PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G164800.14.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Protein Properties

Length: 117aa MW: 13202.8 Da PI: 11.4774

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G164800.14.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.2	9.4e-16	47	110	36	99
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 + + g++W ++ + +++++ +l +GW +F+++ngL++gD+++F+l+++ ++ +++v+++++ Sevir.9G164800.14.p 47 AVALQCMGKTWITQMVIHNGRRW-FLNGGWVRFARDNGLRVGDICLFELKKNkRKLTMKVHIISR 110 44455689*****77777666.6999******************999999**99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-22	6	110	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-20	7	109	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	7.3E-9	14	111	IPR003340	B3 DNA binding domain
CDD	cd10017	7.87E-17	14	109	No hit	No description
PROSITE profile	PS50863	11.914	15	111	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.1E-14	35	110	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MAFIKEIQPK ITVFVAVMLK RNVQPPGPFL ELGVRYAAAH LPASGQAVAL QCMGKTWITQ 60 MVIHNGRRWF LNGGWVRFAR DNGLRVGDIC LFELKKNKRK LTMKVHIISR EQSSLK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	100	LKKNKRKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G164800.14.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685567.1	7e-81	B3 domain-containing protein Os03g0619600-like
Swissprot	Q6AV22	3e-27	Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBL	K4AG14	1e-60	K4AG14_SETIT; Uncharacterized protein
STRING	Si037821m	2e-61	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	7e-08	B3 family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G164800.14.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]