PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G164800.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 258aa    MW: 29204.9 Da    PI: 9.9402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G164800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.1e-151882513699
                         EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                          +  +  g++W  ++ + +++++ +l +GW +F+++ngL++gD+++F+l+++ ++ +++v+++++
  Sevir.9G164800.3.p 188 AVALQCMGKTWITQMVIHNGRRW-FLNGGWVRFARDNGLRVGDICLFELKKNkRKLTMKVHIISR 251
                         44455589*******77777666.6999**********************9999999***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.0E-6254IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.17E-6253IPR011011Zinc finger, FYVE/PHD-type
PROSITE patternPS013590550IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.101.2E-21147251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-19148250IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.3E-9155252IPR003340B3 DNA binding domain
CDDcd100175.66E-17155250No hitNo description
PROSITE profilePS5086311.914156252IPR003340B3 DNA binding domain
PfamPF023623.8E-13176251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDTVCEVCGN IGYKHLLVCC RDCKCSAVHL YCLDKVIFDA SLAEWWCDEC LQRRGEVPCS  60
RSLERVSSQR SPNHDHFGST VQQQVTKRVK SAKNAGPRRK SKEDIPSAKY SLDSDDLQAS  120
SKAHYVLSYR SYLSEAQKQR VMAFIKEIQP KITVFVAVML KRNVQPPGPF LELGVRYAAA  180
HLPASGQAVA LQCMGKTWIT QMVIHNGRRW FLNGGWVRFA RDNGLRVGDI CLFELKKNKR  240
KLTMKVHIIS REQSSLK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234241LKKNKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G164800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685567.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLA0A2T7C3Q01e-109A0A2T7C3Q0_9POAL; Uncharacterized protein
STRINGPavir.Ia01277.1.p1e-88(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-08B3 family protein