PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G167900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 212aa    MW: 22085 Da    PI: 9.5613
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G167900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.87e-0991458126
                 NAM   8 hPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk.kvka.eekew..yfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         hP+d++l+ + L++ + + +   +    +i+ +d+y+v P++L +  + a ++  w  yf ++++ ++     +  a  +g W ++ ++  
  Sevir.9G167900.1.p   9 HPNDHDLIAFVLRPMAVAGHhhgFVGGGIIHLADVYSVAPERLAErYAPApGTGGWiwYFLCPARCRH--RAAAAGALGQGCWASSSETGG 97 
                         8************99666662333333479999**********8422223333355327777765544..456666889*****9999888 PP

                 NAM  92 vlsk.....kgelvglkktLvfy........kgrapkgektdWvmhey 126
                         v ++     +g+ vg  + L +            a   ++  W+m e 
  Sevir.9G167900.1.p  98 VAARpvrgpGGRRVGQSRALSYSsygartaaAPWAAAVTRHGWCMVEL 145
                         8888787779999********984444322111223334666777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.6242169IPR003441NAC domain
SuperFamilySSF1019418.11E-178169IPR003441NAC domain
PfamPF023658.7E-89146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAAAAAADHP NDHDLIAFVL RPMAVAGHHH GFVGGGIIHL ADVYSVAPER LAERYAPAPG  60
TGGWIWYFLC PARCRHRAAA AGALGQGCWA SSSETGGVAA RPVRGPGGRR VGQSRALSYS  120
SYGARTAAAP WAAAVTRHGW CMVELELDKQ GGGGGRAGGD FVLCKLFRSP RNEAPTTAVP  180
GLVSGCKRKA AVDDHPDTPP GVRQHLMQRS Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G167900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986380.11e-147uncharacterized protein LOC101758118
TrEMBLA0A368SHH01e-146A0A368SHH0_SETIT; Uncharacterized protein
STRINGSi039061m1e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158