PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G168000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 228aa    MW: 24268.5 Da    PI: 8.991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G168000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-0584106123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ CgksF+++  L  H ++H
  Sevir.9G168000.1.p  84 HRCSVCGKSFPSHQALGGHKSSH 106
                         79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.9E-1184107IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.38584111IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-984106No hitNo description
SMARTSM003550.008984106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-9138165No hitNo description
PfamPF139124.5E-12142167IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452143170IPR007087Zinc finger, C2H2
SMARTSM003550.29143165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAATVEAAVL DAAAVPWPPR HQEGDDEEER AVVYAQERCA RGKRSRRRHL RRAPTEEEHL  60
ALCLLMLARG QRDARAPRVP AQEHRCSVCG KSFPSHQALG GHKSSHRTRP PAAAPPTPAA  120
EQPAPAASPA ASSSTSGAGS RVHECSMCRK TFPTGQALGG HKRCHYDGTA AGASTTSTTG  180
FSRGFDLNIP ALPEMILGDR CMPAAAEEEK EVLSPLAFKK PRLMILA*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G168000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982438.11e-117zinc finger protein 1
SwissprotQ424307e-47ZFP1_WHEAT; Zinc finger protein 1
TrEMBLK4AEN61e-115K4AEN6_SETIT; Uncharacterized protein
STRINGSi037343m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-33zinc-finger protein 2