PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G168300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 237aa    MW: 24392.6 Da    PI: 7.5047
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G168300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.51.1e-292104198
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++
  Sevir.9G168300.1.p   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNWD 92 
                         6*********************9999888899*********************************************************** PP

              DUF260  87 leqlkaelallk 98 
                         l+q++a+++l++
  Sevir.9G168300.1.p  93 LCQAAADAVLRG 104
                         ******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.0971107IPR004883Lateral organ boundaries, LOB
PfamPF031959.0E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGESSLRA LSTIPAAFKD  120
RDMDGLYGNV GAAAASSASP ENSSSTPSKK RRNNGGGGIA CFDAVRATGA CQQPPPAGLL  180
QSCELDLCLT PASPMAGGRR GCGASDEYSA TTTCEDLQAT GGDVEPRAPA LLNLFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G168300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880021e-144AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982442.11e-172LOB domain-containing protein 37
TrEMBLK4AEG81e-170K4AEG8_SETIT; Uncharacterized protein
STRINGSi037275m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-54LOB domain-containing protein 37