PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G170700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 297aa    MW: 33279.2 Da    PI: 9.8855
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G170700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003785106223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C+ C k+F + + L  H+r H
  Sevir.9G170700.1.p  85 ECQLCFKVFASCHALSMHMRAH 106
                         6*******************99 PP
2zf-C2H216.91.7e-05228250123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cgk+F+++  L +H + H
  Sevir.9G170700.1.p 228 HDCKLCGKVFTSSKGLASHKKFH 250
                         56******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.8E-5827IPR007087Zinc finger, C2H2
SMARTSM003552.584106IPR015880Zinc finger, C2H2-like
PfamPF139120.00984106IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.57584111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-5226258No hitNo description
SMARTSM003550.033228250IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-4228250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.002228251IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.51228255IPR007087Zinc finger, C2H2
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MPPRGRKHWC KLCKKSFPSC NSLGGHMNLA IRDKCMQKKL ARSTLSLPKI SAGAGGYRLR  60
ERQHSTWLLR DSSVDEDQTM VPKTECQLCF KVFASCHALS MHMRAHTRHE KKMVAKEASR  120
KSSGYCDHND AVPTPVMLTY GIEEVNAARV LLMISGHSGM DSASEHCNED YEMDGNSAYR  180
MQKNERELDY SFHGQIGGAD LMMPESPSSD AKLKFSSLSR VLKATESHDC KLCGKVFTSS  240
KGLASHKKFH KADSRLLCLN LPGFIDRKYR SRSPKSAQTP WWTTRGFRSE RILGGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G170700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982453.10.0zinc finger protein ZAT1
TrEMBLA0A368SHK00.0A0A368SHK0_SETIT; Uncharacterized protein
STRINGSi036839m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-06C2H2-like zinc finger protein