PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G196700.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

YABBY

Protein Properties

Length: 214aa MW: 22859.7 Da PI: 10.0661

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G196700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	130.7	1.9e-40	106	172	105	170
YABBY 105 edeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Sevir.9G196700.2.p 106 AKEPSPRTNPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 172 567788888879*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.8E-39	107	172	IPR006780	YABBY protein
SuperFamily	SSF47095	2.23E-8	110	166	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.0E-4	121	164	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MRGLLFQGTP TNTAAPPADV TSTTTTITTE PPAAADASVN NGQFHFHHSL NLNPPHQQSL 60 LDEISSSANP SLQLLEQHGL GGLIPSGRNA AAPPPPHPPA AAAKGAKEPS PRTNPVVNRP 120 PEKRQRVPSA YNRFIKDEIQ RIKAGNPDIS HREAFSAAAK NWAHFPHIHF GLMPDHQGLK 180 KTSLLPHQDH QRKDGLLKDG LYAAAANMGV APY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G196700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727991	1e-153	KJ727991.1 Zea mays clone pUT6111 C2C2-YABBY transcription factor (YAB9) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982656.1	1e-154	protein YABBY 3
Swissprot	Q8L556	5e-80	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	K4AD31	1e-153	K4AD31_SETIT; Uncharacterized protein
STRING	Si036788m	1e-154	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	5e-48	YABBY family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G196700.2.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]