PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G231900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 515aa    MW: 55867.1 Da    PI: 9.9359
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G231900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-19129163135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cgt +Tp+WR+gp+g  tLCnaCGl+yr+ +l
  Sevir.9G231900.1.p 129 CRHCGTEETPQWREGPEGAATLCNACGLRYRSGRL 163
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.0E-19123173IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.349123159IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15125184No hitNo description
Gene3DG3DSA:3.30.50.103.2E-15126160IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.60E-17128184No hitNo description
PfamPF003202.2E-17129163IPR000679Zinc finger, GATA-type
PROSITE patternPS003440129154IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MVVENAPHGD SVAAVADELF FSAGAGVDLE TFFDHAVRVA AAPCFRVFAV LGWEMRGLTQ  60
GRFLQALEVA AAGSSGAKGE EEELEWLSNK DAFPAVETML PAAAPRPPTK GARRRRRVVA  120
KKAMAGRRCR HCGTEETPQW REGPEGAATL CNACGLRYRS GRLVPEYRPA SSPTFSPEMH  180
SNRHNRVVEM RRQRQVAAVA SPGAAFGEKA LGAVSSEALP KGERPAKRLR FRQQSPANPA  240
LRSPFEEAEP KNPAPAAPPR LFPTLTLEEG PQAVEATAGR LGGGDGDGGG AQRGGSKLIF  300
DVLGFSSYRQ QLSYNSVLGH RVQLVRAVGE VQLYTKCNAR RCAKEGEAVG GVGKARRWEE  360
GGAPQRAQAA ALAREAEECA TASAMEKKPR NQCDEGKDGE GNFSSRLRYP LYSCMEVNEL  420
ERREDKIEGE EECSASAVIG RRLHWSKKRS SRDRILRSLG KEDSASQARF CRVEGLARSS  480
TWSGRVKCRI GCRGSVLADR REGRALQARV LQAR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G231900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK4AJE40.0K4AJE4_SETIT; Uncharacterized protein
STRINGSi039011m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.11e-31GATA transcription factor 14