PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G232100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 580aa    MW: 61722.6 Da    PI: 10.7489
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G232100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16104138135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cgt kTp+ R+gp+g +tLCnaCG++yr+ +l
  Sevir.9G232100.1.p 104 CRHCGTDKTPQRREGPEGRSTLCNACGVRYRSGRL 138
                         *******************************9885 PP
2GATA57.22.2e-18498532135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cgt kTp+WR+gp+g  tLCnaCG+ y++ +l
  Sevir.9G232100.1.p 498 CRHCGTEKTPQWREGPEGRQTLCNACGVQYKSGRL 532
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.27798134IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-1198148IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-12100161No hitNo description
Gene3DG3DSA:3.30.50.103.5E-11103135IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.89E-12103152No hitNo description
PfamPF003203.2E-14104138IPR000679Zinc finger, GATA-type
SMARTSM004015.8E-17492542IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.295492528IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.18E-13495554No hitNo description
Gene3DG3DSA:3.30.50.101.8E-14496530IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.70E-13497547No hitNo description
PfamPF003202.3E-16498532IPR000679Zinc finger, GATA-type
PROSITE patternPS003440498523IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MVVVEVLQGD SAAAVADDLF GSGADLQAFF DHAALDVKAS GGGEEGEEEL EWLSNKEAFP  60
AVETMASSAP RQRTKGVPPP RWEVGWSPRQ APAVARPPAA GWRCRHCGTD KTPQRREGPE  120
GRSTLCNACG VRYRSGRLVP EYRPASSPTF SPELHSNRHS RVVEMRRRRE AAAGASLAAA  180
GKGEEKGNEK LECLSNKGEF LAVQMMAAAR PRTEGTRRPR KAVDWPAIAW RPPPPPRAPA  240
VAARRPSQGG GVGVAVDQGR APGGGDDGVG GCAAAYQGRT AVPADGGLNP AAPLAPAAAP  300
GQQFGTEKTL QRLGGAEGRS TLCNACVVQY RSGCMVPVLP PACSPAFSPE LRFDWHNRVE  360
MHRRRERSAK LPPATARAGE KGKEELEWPS NKGVFPAAQA MSPAAAGARP QTKGVRRQRQ  420
RQQRRRRRVV ELSPPRTPPP LRRRSRCGGE AAAVEQGRVR DGGAAADEVL AAAPAGGGKD  480
PAAPAAAPRT PAVSRRRCRH CGTEKTPQWR EGPEGRQTLC NACGVQYKSG RLVPEYRPAS  540
SPTFSPGLHS NCHRQVVQLR RRREESAEVS PAAAAVGDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G232100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982957.10.0uncharacterized protein LOC101761214
TrEMBLK4A7L50.0K4A7L5_SETIT; Uncharacterized protein
STRINGSi034871m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2765644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-27GATA transcription factor 1