PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G238700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 227aa    MW: 26181.1 Da    PI: 10.0864
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G238700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-08141188348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                          WT+ E +llv++v ++G g+W++  ++      Rt+ ++k++w+++l
  Sevir.9G238700.1.p 141 HWTAKEVKLLVHGVSKFGVGRWSKLKKKYFktSVRTAVNLKDKWRNLL 188
                         5*************************99998967************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.177134192IPR017930Myb domain
SuperFamilySSF466894.74E-15136213IPR009057Homeodomain-like
SMARTSM007175.6E-8138190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-12141189IPR009057Homeodomain-like
PfamPF002495.8E-7141188IPR001005SANT/Myb domain
CDDcd116602.14E-19142189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEQPEISFCS PEMEQTGLFW LPVEEAEQGL DGLLGDLQLS LASSTACGLQ MENYRARDDD  60
AVLILKLLEE PRDEADLDEW LSGGLHESPL QDTVSHHQME CRRSGRRGTR KRRTSPWDTL  120
FFGGIPLRRA GKYITRKNNS HWTAKEVKLL VHGVSKFGVG RWSKLKKKYF KTSVRTAVNL  180
KDKWRNLLRA YQKNIQKYTL LDLEPPLVEQ IRKLAVKHPY PKRRHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113TRKRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G238700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986549.11e-168uncharacterized protein LOC101754485
TrEMBLA0A368SLP31e-167A0A368SLP3_SETIT; Uncharacterized protein
STRINGPavir.Ia01842.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.19e-16TRF-like 6