PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G238800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 262aa    MW: 29787.4 Da    PI: 7.0189
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G238800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-08125171347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                          WT++E  llv++v ++G g W+ +  +      Rt+ ++k++w ++
  Sevir.9G238800.1.p 125 HWTQDEVRLLVNGVSEYGVGKWRDVRTKYFltSIRTPVHLKDKWKNL 171
                         6**************************9999988***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.744118176IPR017930Myb domain
SuperFamilySSF466891.29E-14120200IPR009057Homeodomain-like
SMARTSM007172.7E-6122174IPR001005SANT/Myb domain
PfamPF002492.5E-6125171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-11125173IPR009057Homeodomain-like
CDDcd116602.51E-18126173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MESEAMDLEL QLLWKGPSNE KHLDECVGVF DHYSHQIENQ FHSLNVKDGE VADEETNIDD  60
LDIEDYMDPS MLGCFFPNGS LGHGRRGPRR TSTSVRVVKF TPNFGLQEPS TSGGRKHGGR  120
KNNDHWTQDE VRLLVNGVSE YGVGKWRDVR TKYFLTSIRT PVHLKDKWKN LVKACKKESG  180
RMLLPLEQSL IERIMEIDDY DPYPKQSNSA PDRLAPTTSP DLPSVLPPAR WSVVKARTER  240
PSMHKSKNNN QRTSIDTNKD L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G238800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368SK040.0A0A368SK04_SETIT; Uncharacterized protein
STRINGSi039881m1e-103(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.11e-11TRF-like 3