PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G240800.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family E2F/DP
Protein Properties Length: 249aa    MW: 27820.2 Da    PI: 4.8282
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G240800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.84.2e-242791571
             E2F_TDP 15 klleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                        +++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Sevir.9G240800.4.p  2 RVCEKVESkGRTTYNEVADELVAEfsdpninidspdpdnpsaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQWRG 79
                        79***9999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.0E-1031248IPR015648Transcription factor DP
SuperFamilySSF467857.48E-17180IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-37185IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-28179IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-21279IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144582.62E-4084187IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.41E-4086196No hitNo description
SMARTSM011386.9E-8086246IPR014889Transcription factor DP, C-terminal
PfamPF087812.0E-4187219IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MRVCEKVESK GRTTYNEVAD ELVAEFSDPN INIDSPDPDN PSAQQYDEKN IRRRVYDALN  60
VLMAMEIISK DKKEIQWRGL PKTSMNDIEE LKTEIVGLKG RIDKKSAYLQ DLQDQYVSLQ  120
NLVQRNEQLY GSGDAPSGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELQDD  180
SFVLKAMGLS GKEETDGTQA PVANGGECSS TPNNYWHQSP QPTRPRGVRL PNSPPIPGIL  240
KGRVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-301841793PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G240800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365660.0BT036566.1 Zea mays full-length cDNA clone ZM_BFb0123L22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983025.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-104DPB_ARATH; Transcription factor-like protein DPB
TrEMBLK4AC690.0K4AC69_SETIT; Uncharacterized protein
STRINGSi036476m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-102Transcription factor DP