PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G251000.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 299aa    MW: 32600.5 Da    PI: 4.9711
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G251000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.8e-1972125356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L  rqV vWFqNrRa++k
  Sevir.9G251000.3.p  72 KKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWK 125
                         4557899**********************************************9 PP
2HD-ZIP_I/II125.62.3e-4071163193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl+++qv++LE+sFe ++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E+d+++L++++dal++e ++L++++++L++e+
  Sevir.9G251000.3.p  71 EKKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWKTKQIERDFTTLRARHDALRAECDALRRDKDALAAEI 161
                         69**************************************************************************************999 PP

         HD-ZIP_I/II  92 ke 93 
                         +e
  Sevir.9G251000.3.p 162 RE 163
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-1953128IPR009057Homeodomain-like
SuperFamilySSF466893.43E-1867129IPR009057Homeodomain-like
PROSITE profilePS5007116.47167127IPR001356Homeobox domain
SMARTSM003896.0E-1970131IPR001356Homeobox domain
CDDcd000861.38E-1672128No hitNo description
PfamPF000463.6E-1672125IPR001356Homeobox domain
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PfamPF021831.6E-14127168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKRPTSRGSS MVCQATTDQQ DSCRYMEQRH GVDGGDCGAA AAERDDVEAG AYDEEEEEDD  60
ELAGSRGGLG EKKRRLAADQ VRALERSFEV DNKLDPERKA RIARDLSLHP RQVAVWFQNR  120
RARWKTKQIE RDFTTLRARH DALRAECDAL RRDKDALAAE IRELRSKVEK QMEVKLESAE  180
ELLPVAAGTA AAAGAVYKDG STDSDSSAVF NEEASPYSGA AFDHQHHHHQ AHPSFTGFTS  240
FLASSTSLSS SFPSLYHGGS HLDQEADGFL SATAADGFFA AEEQGAAGLG SWYGGEGW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G251000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420270.0BT042027.1 Zea mays full-length cDNA clone ZM_BFb0113G23 mRNA, complete cds.
GenBankKJ7275560.0KJ727556.1 Zea mays clone pUT5416 HB transcription factor (HB127) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983073.10.0homeobox-leucine zipper protein HOX8 isoform X2
SwissprotQ338Z73e-95HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBLK4AM781e-177K4AM78_SETIT; Uncharacterized protein
STRINGSi040014m1e-178(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-34homeobox protein 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]