PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G261100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 255aa    MW: 28353.1 Da    PI: 7.0255
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G261100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.72.8e-081965253
                 AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkl 53
                        +y+GV   + +g+W A+I    + +g  + f++g+f ta  Aa a+++a ++ 
  Sevir.9G261100.1.p 19 QYRGVAMLP-DGKWHAYIV---NrDG--RPFNVGRFETATAAALAHDRAILAV 65
                        69*******.9******54...4343..*******************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-101978IPR001471AP2/ERF domain
CDDcd000181.58E-111980No hitNo description
PROSITE profilePS5103212.1671978IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-101977IPR016177DNA-binding domain
SMARTSM003804.3E-51984IPR001471AP2/ERF domain
PfamPF008472.8E-42064IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MATTEVPVAL TPTPATAVQY RGVAMLPDGK WHAYIVNRDG RPFNVGRFET ATAAALAHDR  60
AILAVLGADT SAAVLNFRAA FSDTELRFLR GRHAPMRPTG VVAMVQKSCD GSYDAELSRF  120
AAHAFDAYMD PELALDVANF RLRHSDMLHR LKEKASITAG TNASQETCAK AKLDAEREAF  180
VQAAKNKATD ELWVKQYHQR RQQTGRTFED ENRWPLVLPD VNVHVDWFPG EELIYLPHGS  240
SYVDEMILRK DVPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G261100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK4AKM20.0K4AKM2_SETIT; Uncharacterized protein
STRINGSi039445m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150581718