PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G306600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 306aa    MW: 33088.3 Da    PI: 6.6154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G306600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11151197455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ + f++L +++P       +K +K+++L  ++eY+++L+
  Sevir.9G306600.1.p 151 EHVIAERKRREKMHHQFATLASIIPDI-----TKTDKVSVLGSTIEYLHHLR 197
                         5999**********************7.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.608147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14151209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9151196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15152217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.02E-12152201No hitNo description
SMARTSM003531.6E-13153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDSSASQWLA ELENDDLGGL EFIDPLSMQQ LAESLANELW NEPRAPQEQQ QEQNYQPQQC  60
TPPPKGFAFV GDLNLNTANG RCPTPVVSAG GIDNMFSFTA GGLSAPLNFT AQEETGQAES  120
VATGSTVGKC CSSSTTEKKS GGRKPSSSVK EHVIAERKRR EKMHHQFATL ASIIPDITKT  180
DKVSVLGSTI EYLHHLRNRL RTLQEQQHQQ GSSTAESPTT LNARRCCIAS EGDGAASPKI  240
EADVQGTTVL LRVVCRKKKG VLIMVLTELE KHRLSIINTN VVPFAKSSLN ITITAQVNCS  300
LCPEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERKRRE
2156161RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G306600.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685471.10.0transcription factor bHLH19-like
TrEMBLA0A368SM720.0A0A368SM72_SETIT; Uncharacterized protein
STRINGSi036673m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-28bHLH family protein