PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G306600.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 292aa    MW: 31555.7 Da    PI: 8.4975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G306600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11124170455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ + f++L +++P       +K +K+++L  ++eY+++L+
  Sevir.9G306600.2.p 124 EHVIAERKRREKMHHQFATLASIIPDI-----TKTDKVSVLGSTIEYLHHLR 170
                         5999**********************7.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.608120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14124182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9124169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.43E-12125174No hitNo description
SuperFamilySSF474592.62E-15125190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.484223291IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MQQLAESLAN ELWNEPRAPQ EQQQEQNYQP QQCTPPPKGF AFVGDLNLNT ANGRCPTPVV  60
SAGGIDNMFS FTAGGLSAPL NFTAQEETGQ AESVATGSTV GKCCSSSTTE KKSGGRKPSS  120
SVKEHVIAER KRREKMHHQF ATLASIIPDI TKTDKVSVLG STIEYLHHLR NRLRTLQEQQ  180
HQQGSSTAES PTTLNARRCC IASEGDGAAS PKIEADVQGT TVLLRVVCRK KKGVLIMVLT  240
ELEKHRLSII NTNVVPFAKS SLNITITAQI EDGSSTTVEL VNNLNSALKK F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133ERKRRE
2129134RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G306600.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685471.10.0transcription factor bHLH19-like
TrEMBLK4ACR60.0K4ACR6_SETIT; Uncharacterized protein
STRINGSi036673m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.14e-31bHLH family protein