PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G306800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 248aa    MW: 27253.9 Da    PI: 8.5082
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G306800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1898152256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Sevir.9G306800.1.p  98 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTK 152
                         78889************************************************98 PP
2HD-ZIP_I/II124.55e-4098186190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr +
  Sevir.9G306800.1.p  98 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-A 186
                         69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-1989155IPR009057Homeodomain-like
PROSITE profilePS5007117.18494154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-1896157IPR009057Homeodomain-like
SMARTSM003891.1E-1596158IPR001356Homeobox domain
CDDcd000862.17E-1698155No hitNo description
PfamPF000465.9E-1698152IPR001356Homeobox domain
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
SMARTSM003401.2E-20154197IPR003106Leucine zipper, homeobox-associated
PfamPF021833.2E-10154187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEQEEVGLAL GLSLGSSGHH ELKEQPSPSS RSWARLEPSL SLSLPTKDSR LSAPVRIAAV  60
KRELPMEEDD EATADRALYS VASSALVAAD DDEGCNSRKK LRLTKEQSAL LEDRFKEHST  120
LNPKQKAALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC ELLKRCCETL TEENRRLHRE  180
LQQLRALNHP HPATFFMPAA TLSICPSCER LAGAPATTTT GADRPKAGGG PGRAAHLFSP  240
FTHSTAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102SRKKLRL
2146154RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G306800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0989841e-127FP098984.1 Phyllostachys edulis cDNA clone: bphylf047o12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983488.11e-179homeobox-leucine zipper protein HOX15
SwissprotQ7G7372e-83HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLK4AE821e-178K4AE82_SETIT; Uncharacterized protein
STRINGSi037189m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-64HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]