PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G331200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 368aa    MW: 37851.8 Da    PI: 7.7044
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G331200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.1e-18262297136
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                         C++C + kTp+WR gp g+ktLCnaCG+++++ +l+
  Sevir.9G331200.1.p 262 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 297
                         ********************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-16256306IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.227260292IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-14260320No hitNo description
Gene3DG3DSA:3.30.50.102.4E-13260294IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.40E-13261308No hitNo description
PfamPF003201.3E-15262297IPR000679Zinc finger, GATA-type
PROSITE patternPS003440262287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MASEWEMAMG VELGMGMGTY HGHHNASSIT TAPMSSHHSG GASYSTAHHH HYYGMPPMGD  60
AMRVDELLDL STGAGAHDFF PTAAGAAAAD NGHHSGAMGE PSPTANSSDH QTSLLSFADE  120
FYIPSEEAAE LEWLSKFVDD SYSDMPNYSS HAAMAAAAAA NAAGNGGGNS GGQDSCVTAA  180
PGRGARSKRS RATAAAAAAW HSLVPRPPSQ SSPSSSCSSS DFPSSNKPGR PNGANGSRGK  240
KSPGPGGAAG AEVGMEGGVR RCTHCASEKT PQWRTGPLGP KTLCNACGVR FKSGRLMPEY  300
RPAASPTFVL TQHSNSHRKV MELRRQKELI LIRGSHRDAA AAAAAASAAA GSAGPRPELM  360
FRDYGVC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G331200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0688040.0BT068804.1 Zea mays full-length cDNA clone ZM_BFb0383N16 mRNA, complete cds.
GenBankBT0877980.0BT087798.1 Zea mays full-length cDNA clone ZM_BFb0206G21 mRNA, complete cds.
GenBankEU9562060.0EU956206.1 Zea mays clone 1559028 GATA transcription factor 9 mRNA, complete cds.
GenBankKJ7269570.0KJ726957.1 Zea mays clone pUT3655 C2C2-GATA transcription factor (GATA28) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983678.10.0GATA transcription factor 2
SwissprotO497418e-60GATA2_ARATH; GATA transcription factor 2
TrEMBLK4ABL60.0K4ABL6_SETIT; GATA transcription factor
STRINGSi036273m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.14e-43GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]