PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G332100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 325aa    MW: 34477.3 Da    PI: 9.825
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G332100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.92.2e-16210244135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C t kTp+WR gp g+ktLCnaCG+ y++ +l
  Sevir.9G332100.1.p 210 CLHCETNKTPQWRTGPLGPKTLCNACGVWYKSGRL 244
                         99*****************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.102.0E-14203241IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.033204240IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-11204254IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-14206267No hitNo description
CDDcd002021.65E-11209243No hitNo description
PROSITE patternPS003440210235IPR000679Zinc finger, GATA-type
PfamPF003205.3E-14210244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MPAGESSSTE RMGGRRETGS GARLRLMPVP APNRKLSHDA QGSSQEKPTS STNMWSASTE  60
NLGSMSHERW SPYDQLAELE WLSNYMGKDN FPTEDLKKLQ IITSVPPASS TDTAMAFVSA  120
PVVLPDGGVL PPEAPVPGKA SRLLVLPPPP VSPPSPASAA ISPSESGTTA PAFPAKKPLK  180
PAKKKEPSTT PEPNATTVAT AASAGEGRKC LHCETNKTPQ WRTGPLGPKT LCNACGVWYK  240
SGRLVLEYRL AASLTFVVSK HSNSHRKVLE LHRQKEAMGH MGAGATGGLM HTPSPLLFDG  300
PTGPLIGNDF LIHNRIGLDF RQLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G332100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0546071e-67BT054607.1 Zea mays full-length cDNA clone ZM_BFc0189F08 mRNA, complete cds.
GenBankKJ7268511e-67KJ726851.1 Zea mays clone pUT3391 C2C2-GATA transcription factor (GATA25) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146093.11e-101uncharacterized protein LOC100279625
TrEMBLK4AMC50.0K4AMC5_SETIT; Uncharacterized protein
STRINGSi040064m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-43GATA transcription factor 12