PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G353900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 180aa    MW: 19301.8 Da    PI: 6.5188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G353900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-172373156
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        + y+GVr +   g+Wv+eIr+       +  r++lg++ t+e+Aa+a++aa+++l+g+
  Sevir.9G353900.1.p 23 PVYRGVRLR--AGKWVSEIRElR-----KpSRIWLGTYPTPEMAAAAYDAAALALRGA 73
                        68****975..6*********66.....68*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-112372IPR001471AP2/ERF domain
SMARTSM003804.2E-232486IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-182481IPR016177DNA-binding domain
PROSITE profilePS5103218.7822480IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-252481IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEQRRLEEQR ACGRRARAET RHPVYRGVRL RAGKWVSEIR ELRKPSRIWL GTYPTPEMAA  60
AAYDAAALAL RGAGTALNFP DAARSRPAPA SASAEDVRAA AAAAAAAMDG RRHHHHELRG  120
DSGDAMAAGG VVDEDDLFEM PRLMMSMAEG LMMSPPALGP AAAPMMEADE EGVSLWDHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1222801272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G353900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0788941e-81AC078894.11 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence.
GenBankAP0149661e-81AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY2582801e-81AY258280.1 Oryza sativa (japonica cultivar-group) CR103 transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983870.11e-123ethylene-responsive transcription factor ERF026
SwissprotA2WZI43e-39DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z53e-39DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLK4AFQ71e-122K4AFQ7_SETIT; Uncharacterized protein
STRINGSi037714m1e-122(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.15e-19ERF family protein
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]