PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G362600.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Protein Properties

Length: 213aa MW: 24349 Da PI: 10.0376

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G362600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.6	2.4e-18	113	204	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +k+ ++++ + l+lp +f++eh +e +k +tl de+ +++v++ ++++y +t W++F+ +++L++gD +vF+l+++++f Sevir.9G362600.2.p 113 LKTV-SKYYATAFSLSLPPHFCREHL--PEHGKVITLVDEEDDEFDVQYYKGPNDRGYCIT-SWRGFATDHKLDDGDCLVFQLIQQRKF-- 197 4444.777788888*********5..346779***********667777779999.9*******************97777.. PP EEEEE-S CS B3 93 vvkvfrk 99 +v ++r+ Sevir.9G362600.2.p 198 KVYIIRA 204 8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-20	106	204	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.81E-22	107	204	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.66E-23	110	203	No hit	No description
PROSITE profile	PS50863	11.406	111	205	IPR003340	B3 DNA binding domain
SMART	SM01019	2.2E-15	112	205	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-16	113	204	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MADAARYEVQ RRRQIEENKR RIEELGLRHL AAAAMPPKAK QLKLKHKARA PGAAAPPRRS 60 GRVANLPDQP DYRENVKKKI VIGPTAAERS YAIAKAKAKE LEGELRADYP TFLKTVSKYY 120 ATAFSLSLPP HFCREHLPEH GKVITLVDEE DDEFDVQYYK GPNDRGYCIT SWRGFATDHK 180 LDDGDCLVFQ LIQQRKFKVY IIRARSYLKM MS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G362600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698151.1	1e-157	B3 domain-containing protein Os06g0194400
Refseq	XP_022679065.1	1e-157	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-60	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A368SP69	1e-155	A0A368SP69_SETIT; Uncharacterized protein
STRING	Si039359m	1e-108	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-26	B3 family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G362600.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]