PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G365700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 498aa    MW: 52494.4 Da    PI: 8.3334
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G365700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.3e-31214270259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK vkg e+prsYY+Ct+a+Cpvkkkvers  ++++++i+Y+g+Hnh+
  Sevir.9G365700.1.p 214 DDGYNWRKYGQKAVKGGEYPRSYYKCTHASCPVKKKVERSG-EGHITQIIYRGQHNHQ 270
                         8***************************************9.***************8 PP
2WRKY104.17.8e-33382440159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  Sevir.9G365700.1.p 382 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 440
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27210272IPR003657WRKY domain
SuperFamilySSF1182909.94E-25212272IPR003657WRKY domain
SMARTSM007743.9E-33213271IPR003657WRKY domain
PfamPF031069.7E-24214270IPR003657WRKY domain
PROSITE profilePS5081123.399214272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-36369442IPR003657WRKY domain
SuperFamilySSF1182902.48E-29374442IPR003657WRKY domain
PROSITE profilePS5081137.172377442IPR003657WRKY domain
SMARTSM007741.0E-38382441IPR003657WRKY domain
PfamPF031061.7E-25383440IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MAAHEASASA PAAGDGAARR PPRPTLALPP RSAVESLFAG AGGSSSSAGA AETSPGPLTL  60
AAALFPDAPS PAFHGSFTQL LVGAIGSPAA AVPTPPSPFS VPPGLSPTAL LGSPGLFSPT  120
GSFEMSHQQA LAQVTAQAVH SQYNMINNSD YSIPFSSTTK PAATVKLQHV NPANVTSTQE  180
ISTLPSHTGN NNIEPNEVSQ GLQNSAPTFD KPADDGYNWR KYGQKAVKGG EYPRSYYKCT  240
HASCPVKKKV ERSGEGHITQ IIYRGQHNHQ RPPKRRSKDG GGLLNEADDF HENEDASTRS  300
EPGSQDHSGK HGGSNDGLAG PSVSRRREGD EQLSGSSDSE EEADDEQRVG NGDAGRANAN  360
RRHVPTPARR IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP HPRSYYKCTY QGCDVKKHIE  420
RSSQDPKAVI TTYEGKHSHD VPAARNSSHA AAAAANANAS SSSSLPHKGQ NSASSSRKRA  480
DMSSASSMLL KEENEIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38214443878Probable WRKY transcription factor 4
2lex_A4e-38214443878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270275RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G365700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9577240.0EU957724.1 Zea mays clone 1612894 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983974.30.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9ZQ701e-109WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLK4A8W10.0K4A8W1_SETIT; Uncharacterized protein
STRINGSi035317m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-78WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]