PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G372900.5.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 249aa    MW: 27282.6 Da    PI: 9.6755
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G372900.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA53.57.6e-17151187138
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38 
                         +ep++VNaKQy++Il+RRq+Rakle+++kl  k+rk+ 
  Sevir.9G372900.5.p 151 EEPIFVNAKQYHAILRRRQMRAKLEAQNKL-VKGRKEV 187
                         69****************************.9999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.6E-12149207IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115218.282150185IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-12152199IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860155175IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MLLREMDGDP FHTMPNYDFL SGNGYSMKQL NCSNSDRDSS STKSEQSRQD LSAVSDGSLN  60
GQHTPTQSEN NDSCGKRDQG MVKSVLSFGN PEADFSPPKF DYSQPFACAS YTADPYYGGV  120
LTGYSSNSIV RPQINGATNS RVPLPIEPAA EEPIFVNAKQ YHAILRRRQM RAKLEAQNKL  180
VKGRKEVASL TKRSSRSSSS GRRLCLHFTL QQVGCAKWPS AGIYALKTAH LTRLRQALGS  240
QVFQMGVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G372900.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984046.11e-135nuclear transcription factor Y subunit A-4 isoform X2
TrEMBLK4AD021e-134K4AD02_SETIT; Uncharacterized protein
STRINGSi036728m1e-132(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.23e-18nuclear factor Y, subunit A3