PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G377000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 204aa    MW: 21865.2 Da    PI: 7.4984
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G377000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY26.61.2e-0810561759
                        T-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                WRKY 17 gsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                        g+  +r YYr t++   +Cp++k+v+++ ++dp +  +tY +eH ++
  Sevir.9G377000.1.p 10 GAAATRYYYRRTYKdnmNCPATKQVQQKdHSDPPLYAVTYYNEHLCN 56
                        67889********99999*******8752679************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031062.8E-11955IPR003657WRKY domain
SMARTSM007747.0E-7957IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-81056IPR003657WRKY domain
SuperFamilySSF1182902.22E-71056IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MLQSGRGKNG AAATRYYYRR TYKDNMNCPA TKQVQQKDHS DPPLYAVTYY NEHLCNSAFL  60
TLSPSEFQLQ TSSGKAISVF FDSSSGPAAQ EPLSTAAAPT NASSGSPSSS AAAQRGTPPE  120
ISNPHVMRRS ETYPWGTGAV EQKPASCSTK FHDAFTASAG VVPSGGRCRQ IWVHQVIGEG  180
SDPPHVCGVT EMFLASEQFY EKD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G377000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586221e-149KU058622.1 UNVERIFIED: Panicum miliaceum WRKY5-like gene, complete sequence.
GenBankKU0586231e-149KU058623.1 UNVERIFIED: Panicum miliaceum WRKY6-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792602.13e-75probable WRKY transcription factor 35
TrEMBLA0A3L6TES94e-76A0A3L6TES9_PANMI; Putative WRKY transcription factor 35
STRINGPavir.Ib01500.1.p2e-70(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100