PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G389000.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 271aa MW: 29648.2 Da PI: 6.606

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G389000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00055	37	69	1	36
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapsk 36 r++ + erE+ Rd++N+ f eL +l + +++ Sevir.9G389000.3.p 37 RKVHKAEREKLKRDHLNDLFVELGNMLDRQ---NNG 69 677889******************999776...443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-9	36	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-7	36	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MVPSERGSVA TAVSTAAADK LLHGPIAGKK CKKAAPRKVH KAEREKLKRD HLNDLFVELG 60 NMLDRQNNGK ACILTDTTRI LRDLLLQVES LRKEHSNLQN ESHYVAIERN ELQDENGVLR 120 KEISELQDEL RMRTSSNPAD WGHGNAGLNP PVPHPASAVF SSQQAMQPPT IASTVFPLQP 180 PLAPSAVIEQ SYATPPSLEL KLFPGAESVE VHERSEDQEA PNHVARPQAR YPPQSASWPV 240 TLFSGLPRME DEQCSSSTTS SSKETSTGRD *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G389000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984211.1	1e-180	transcription factor BHLH062
Swissprot	Q69V10	8e-83	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	K4ADQ9	1e-179	K4ADQ9_SETIT; Uncharacterized protein
STRING	Si037016m	1e-180	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	2e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G389000.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]