PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G417400.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 330aa    MW: 33890.2 Da    PI: 6.3516
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G417400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.81.5e-25123183259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg+ WrKYGqKe+++s +prsYYrCt++   gC++k++v+ ++ dp+ +++tY g+H+++
  Sevir.9G417400.3.p 123 EDGHVWRKYGQKEIQNSSYPRSYYRCTHRsdqGCNAKRQVQVCEADPSKFVVTYYGDHTCR 183
                         8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-27117185IPR003657WRKY domain
PROSITE profilePS5081122.986117185IPR003657WRKY domain
SuperFamilySSF1182908.37E-25120185IPR003657WRKY domain
SMARTSM007741.3E-34122184IPR003657WRKY domain
PfamPF031062.1E-24123183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MASSLGRDVP AERTAAVAND LVEARDGAAT LRVFLLQLDD HRAPWAQRVV DGVLDRLSSA  60
MSALDDVSDA AAGRRSPAAG GSGSGGAARP QQSVSSSGNT RKRSFVSRRS QRPSDKKITA  120
TLEDGHVWRK YGQKEIQNSS YPRSYYRCTH RSDQGCNAKR QVQVCEADPS KFVVTYYGDH  180
TCRDPSTIPL VVPAAGAAPD CANNLINFGT SGTNNNAAAS TTGASSSQYL AMGGSAADQL  240
STSWCASDDV FSSSAGSFMQ VDELIGAVVG SAGVTSTATV GSSALDRGGH GGMGMAGGGG  300
GTASFPPSPN GLGSFVVGSY DDDLFPMDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-27118183469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G417400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984468.10.0probable WRKY transcription factor 70 isoform X2
TrEMBLK4ACH40.0K4ACH4_SETIT; Uncharacterized protein
STRINGSi036565m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-25WRKY DNA-binding protein 70