PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G425100.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 221aa    MW: 22976.6 Da    PI: 10.0404
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G425100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.29.7e-15173214546
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                         +r +r++kNRe+A rsR+RK+a++ eLe+k+ +Le+eN++L+
  Sevir.9G425100.3.p 173 RRKKRMIKNRESAARSRARKQAYTNELENKISQLEEENERLR 214
                         799*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-14166214No hitNo description
SMARTSM003387.9E-4169217IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.656171214IPR004827Basic-leucine zipper domain
CDDcd147074.36E-21173214No hitNo description
SuperFamilySSF579595.31E-11173215No hitNo description
PfamPF001701.9E-12173214IPR004827Basic-leucine zipper domain
PROSITE patternPS000360176191IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGAKAMSSHG SGAAGGGGGG AALSRQGSVC SLTFGEADGQ LHGVNLDDLL RAGRKTVDEV  60
WRDIQGAGGG ACPRAQMTLE DFLSRAGTSA PADAAGNGAC ARSWGAHQLY QPAPAPQLGR  120
HHQPAVGRPV PRPLGVGAGP VLEALYYEGG AAAAAGGNRA GPEHGVAERS NERRKKRMIK  180
NRESAARSRA RKQAYTNELE NKISQLEEEN ERLRGHKWLQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G425100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614233e-39AK361423.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987020.21e-155ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
TrEMBLA0A368SRJ11e-154A0A368SRJ1_SETIT; Uncharacterized protein
STRINGSb01g036810.12e-97(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.12e-24ABA-responsive element binding protein 3