PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G428400.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 304aa MW: 34024.7 Da PI: 9.9806

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G428400.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.6	1.7e-10	18	60	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k+ rr+++NReAAr+sR+RKka++++Le +L + ++L+ Sevir.9G428400.3.p 18 QKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQELQ 60 5899*************************96666666555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-8	15	78	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.0E-8	15	62	No hit	No description
PROSITE profile	PS50217	9.289	17	61	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.19E-7	19	62	No hit	No description
Pfam	PF00170	1.7E-7	19	60	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	22	37	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.8E-33	101	176	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MASNSSDRSD RSDKPMDQKV LRRLAQNREA ARKSRLRKKA YVQQLESSKL KLASLEQELQ 60 KARQQGIFIS SSGDQTHAMS GNGAMTFDLE YSRWQEEQNK QINELRTAVN AHASDSDLRL 120 IVDGIMAHYD EIFRLKGVAA KADVFHILSG MWKTPAERCF LWLGGFRSSE LLKLLVNQLE 180 PLTEQQLMGL SNLQQSSQQA EDALSQGMEA LQQSLAETLA GSLGPSGSSG NVANYMGQMA 240 MAMGKLGTLE NFLRQADNLR QQTLHQMQRI LTIRQAARAL LAIHDYFSRL RALSSLWLAR 300 PRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G428400.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066852	0.0	BT066852.1 Zea mays full-length cDNA clone ZM_BFb0077I20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984573.1	0.0	transcription factor TGA2.2 isoform X1
Refseq	XP_004984574.1	0.0	transcription factor TGA2.2 isoform X1
Swissprot	Q6IVC3	0.0	TGA22_ORYSJ; Transcription factor TGA2.2
TrEMBL	K4ACB3	0.0	K4ACB3_SETIT; Uncharacterized protein
STRING	Si036527m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-143	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G428400.3.p

Publications ? help Back to Top
Chern M,Fitzgerald HA,Canlas PE,Navarre DA,Ronald PC Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light. Mol. Plant Microbe Interact., 2005. 18(6): p. 511-20 [PMID:15986920] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]