PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G453700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 219aa    MW: 23631.7 Da    PI: 8.9946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G453700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.000111051441155
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +R +++ +++  L++l+ +      +K + a++L +A  +Ik+L+
  Sevir.9G453700.1.p 105 KRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAATCIKHLH 144
                         6889999**********999.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.95394143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-6105155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-9105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MWNCSVPHPL LLPYGDDYGI GASPIYSETR PAVSQFSFTQ PTAASPLVKW TAAGETMTGD  60
GSRLRGSKRF KTTTATATET AQGPQHGLRC HAKPTRNRTV KAPCKRSQKL GDKITALQQL  120
VSPYGKTDTA SVLHEAATCI KHLHEQIQIL TASYPAISSP ASQQDTGEEE GATNLRRRGL  180
CLAPLSPEVV QLAVTVEAAL RHRDTADTED RWRLLGTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270RLRGSKRFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G453700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792107.11e-115uncharacterized protein LOC112873346
SwissprotQ9SFZ33e-19BH110_ARATH; Transcription factor bHLH110
TrEMBLK4AL951e-158K4AL95_SETIT; Uncharacterized protein
STRINGSi039675m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.53e-21bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]